Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs475390 chr1:41570459 G/A 1.4E-7 498 27.33 30.53 31.9 KM Plot
THCA rs4771007 chr13:27282769 C/T 3.45E-5 503 31.77 31.37 30.27 KM Plot
THCA rs4802546 chr19:49570686 C/T 7.22E-7 495 31.47 32.37 20.77 KM Plot
THCA rs4802547 chr19:49572547 C/T 1.68E-6 503 31.47 33.53 18.22 KM Plot
THCA rs4809262 chr20:61489101 G/C 6.38E-5 492 30.63 33.87 37.48 KM Plot
THCA rs4809425 chr20:61481641 C/A 5.3E-5 496 31.03 33.7 37.48 KM Plot
THCA rs4809428 chr20:61491090 T/G 6.41E-5 491 31 33.78 37.48 KM Plot
THCA rs4809430 chr20:61493572 A/G 5.91E-5 493 31.02 33.7 37.48 KM Plot
THCA rs4809432 chr20:61495984 A/T 7.43E-5 503 30.82 35.2 37.48 KM Plot
THCA rs4809712 chr20:47248057 G/A 0 503 31.47 33.1 7.77 KM Plot
THCA rs4809713 chr20:47249594 A/G 4.88E-15 501 31.45 33.27 15.5 KM Plot
THCA rs4809714 chr20:47249621 G/A 0 503 31.47 33.27 7.77 KM Plot
THCA rs4810843 chr20:47248642 G/A 0 503 31.47 33.27 7.77 KM Plot
THCA rs4810844 chr20:47248674 G/C 0 503 31.47 33.27 7.77 KM Plot
THCA rs4810845 chr20:47249455 G/T 7.77E-16 503 10.8 33.5 31.45 KM Plot